PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g006540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 337aa    MW: 34286.4 Da    PI: 4.5255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g006540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05195215323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cg+ F ++     H+r H
  Csa10g006540.1 195 CHICGRGFGSWKAVFGHMRAH 215
                     *******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTDNAEKSKA INTDGERDES EEQCSDDDSE TREIVLGLPA LSISSRVTGD IIVPEREENE  60
TPLNEQEEEN EARLNEQAVA ATGLVVAAAE EASMKGKSDA GAGASEYRVD EQAVAAAGLL  120
VAAAEEAVMK GKSDECGSGG KKKSEEGGSG GKKKSRPRTS TQTDDEADGV SKGEAKKPKR  180
KGSELTNPPK GPPICHICGR GFGSWKAVFG HMRAHKDRNY QGFLPPPTFS AAAEDFTIPG  240
KSSAFSLVTA GGGSFVAIAS GGGSSGGFAS GVGSSVGIVS GGAGGAPGGE GGRDGGIDLN  300
VKVVEYTEAA SGSGTAAKFD LNKSPPKEDE EEDKAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432256.10.0PREDICTED: uncharacterized protein LOC104716569
TrEMBLR0H2J11e-108R0H2J1_9BRAS; Uncharacterized protein
STRINGAT4G35610.11e-74(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.13e-52C2H2 family protein